This section will introduce the Ondex Visualisation ToolKit user interface. A network consists of genes/proteins/metabolites as concepts and interactions represented as links i.e. relations between concepts. Firstly, we will explain how to install and run the OVTK. Secondly, we will look at the basic user interface of OVTK. Then we will load up a network to show all menu features of OVTK and some of the core functionality such as layout algorithms, annotators and filters.
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This paper is focused on a pure implementation task rather than in explanation of a general theory or specific graphical algorithms. However, the described solution seems to be interesting and useful to people within a computer graphics community. The reason is simple: there are many people using the OpenGL, Visualization Toolkit [1] (VTK) or DirectX, who want to benefit from .NET Framework features. Simply, it is a runtime environment, which hides the operating system layer to the application and unifies single machine and network environments into one (see [2]). Later, we will describe what a .NET Framework stands for in more detail.
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